Basic Information
Locus ID:
jg20162
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 13851371 | 13867141 | + | jg20162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 85,624.79 Da | 37.43 | 88.20 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 329 | 627 | 3.98138E-150 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 334 | 623 | 9.3E-21 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 334 | 627 | 9.68E-39 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 43 | 307 | 1.41E-29 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 329 | 628 | 5.0E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 42 | 309 | 4.8E-22 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 44 | 311 | 16.879316 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 327 | 628 | 30.878368 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_011097815.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Sesamum indicum] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6I9U9Y7 | glycerophosphodiester phosphodiesterase OS=Sesamum indicum OX=4182 GN=LOC105176644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology