Basic Information
Locus ID:
jg20085
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Phospho-2-dehydro-3-deoxyheptonate aldolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 12051615 | 12054891 | - | jg20085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 54,492.57 Da | 40.99 | 83.06 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01474 | Class-II DAHP synthetase family | 63 | 473 | 2.4E-180 | IPR002480 |
| SUPERFAMILY | SSF51569 | Aldolase | 58 | 472 | 1.54E-183 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 96 | 261 | 3.3E-50 | IPR013785 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 262 | 482 | 2.2E-92 | IPR013785 |
| TIGRFAM | TIGR01358 | DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase | 63 | 473 | 1.2E-209 | IPR002480 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
map00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
ko02024 (Quorum sensing)
map02024 (Quorum sensing)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39980.1 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1. Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae. | 0 |
| RefSeq | XP_011097545.1 | phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Sesamum indicum] | 0 |
| P37822 | Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum OX=4113 GN=SHKB PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UGE5 | Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Sesamum indicum OX=4182 GN=LOC105176445 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology