Basic Information
Locus ID:
jg20065
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11747160 | 11748341 | - | jg20065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 44,378.95 Da | 60.35 | 68.96 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 147 | 190 | 5.36074E-18 | - |
| Pfam | PF13639 | Ring finger domain | 147 | 190 | 3.5E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 196 | 3.06E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 197 | 9.3E-24 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 189 | 3.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 13.035139 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 352 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011097526.1 | E3 ubiquitin-protein ligase RING1-like isoform X2 [Sesamum indicum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9UGD4 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105176428 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology