Basic Information
Locus ID:
jg20051
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11468049 | 11476579 | - | jg20051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 94,106.02 Da | 55.80 | 70.66 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 363 | 663 | 4.2E-41 | IPR001394 |
| Pfam | PF01753 | MYND finger | 95 | 132 | 1.8E-6 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 359 | 666 | 2.55E-79 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 91 | 137 | 8.89E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 356 | 671 | 2.0E-82 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 85 | 138 | 2.1E-9 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 363 | 666 | 49.95969 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 95 | 132 | 11.403899 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 364 | 379 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 95 | 132 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 296 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_011097488.1 | ubiquitin carboxyl-terminal hydrolase 19 [Sesamum indicum] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UGB0 | ubiquitin carboxyl-terminal hydrolase 19 OS=Sesamum indicum OX=4182 GN=LOC105176402 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology