Basic Information
Locus ID:
jg2005
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 14430588 | 14438193 | - | jg2005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 99,210.26 Da | 51.35 | 85.69 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 406 | 485 | 1.6E-9 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 812 | 843 | 2.6E-6 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 92 | 5.2E-13 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 147 | 220 | 6.2E-11 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 812 | 847 | 6.28E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 809 | 848 | 4.5E-8 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 813 | 841 | 8.505968 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011094861.1 | putative RING-H2 finger protein ATL21A [Sesamum indicum] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A6I9U393 | putative RING-H2 finger protein ATL21A OS=Sesamum indicum OX=4182 GN=LOC105174447 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology