Basic Information
Locus ID:
jg20026
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Rhamnogalacturonate lyase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11111909 | 11115822 | + | jg20026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 77,770.86 Da | 33.45 | 75.40 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 372 | 471 | 2.91278E-33 | IPR029413 |
| CDD | cd10320 | RGL4_N | 49 | 340 | 1.13355E-70 | - |
| CDD | cd10317 | RGL4_C | 483 | 669 | 7.76818E-49 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 42 | 242 | 2.5E-80 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 395 | 466 | 1.3E-21 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 481 | 668 | 5.5E-52 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 479 | 669 | 2.13E-45 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 178 | 339 | 1.6E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 370 | 469 | 3.73E-9 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 55 | 345 | 1.2E-9 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 479 | 669 | 1.1E-15 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 369 | 468 | 2.1E-8 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.2 | - | 0 |
| RefSeq | XP_011097518.1 | uncharacterized protein LOC105176420 [Sesamum indicum] | 0 |
| Q8RJP2 | Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=rhiE PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UGC9 | rhamnogalacturonan endolyase OS=Sesamum indicum OX=4182 GN=LOC105176420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology