Basic Information
Locus ID:
jg19953
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
FTSH6
Description:
Belongs to the AAA ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 9972748 | 9975139 | - | jg19953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 60,213.60 Da | 36.33 | 93.71 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 250 | 324 | 7.92411E-20 | - |
| Pfam | PF17862 | AAA+ lid domain | 388 | 430 | 2.8E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 253 | 338 | 1.4E-26 | IPR003959 |
| Pfam | PF01434 | Peptidase family M41 | 446 | 557 | 8.4E-46 | IPR000642 |
| SUPERFAMILY | SSF140990 | FtsH protease domain-like | 448 | 556 | 2.49E-43 | IPR037219 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 211 | 436 | 1.78E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 204 | 365 | 8.7E-49 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 367 | 442 | 8.2E-23 | - |
| Gene3D | G3DSA:3.30.720.210 | - | 79 | 160 | 2.2E-6 | - |
| Gene3D | G3DSA:1.20.58.760 | Peptidase M41 | 443 | 558 | 3.0E-41 | IPR037219 |
| SMART | SM00382 | AAA_5 | 249 | 368 | 3.1E-17 | IPR003593 |
| PRINTS | PR00830 | Endopeptidase La (Lon) serine protease (S16) signature | 483 | 499 | 9.1E-5 | - |
| PRINTS | PR00830 | Endopeptidase La (Lon) serine protease (S16) signature | 257 | 276 | 9.1E-5 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15250.1 | FTSH protease 6. Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation. | 0 |
| RefSeq | XP_020554419.1 | ATP-dependent zinc metalloprotease FTSH 6, chloroplastic [Sesamum indicum] | 0 |
| Q1PDW5 | ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTSH6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8M8VDQ3 | ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Sesamum indicum OX=4182 GN=LOC105176782 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19289, jg19953 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11506, gene_21200 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006893, Ah011706 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11988, Sbi_jg46917 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21206 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008028, GOSA_00009546 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl25093, Sgl30263, Sgl30264, Sgl80395, Sgl82857 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000009318, gene:ENSEOMG00000018298 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0014600, CQ.Regalona.r1.4BG0013110 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30089070, pistato.v30194620 |
| Apiaceae | Apium graveolens | 3 | Ag4G02095, Ag7G01572, Ag8G00882 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G005770, COCNU_08G007580, scaffold004312G000050 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705127, gene-LOC103716421 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.29.V1.1, AsparagusV1_08.207.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G04105, Ftri11G09617, Ftri6G33508 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G06430.1, AT2G30950.1, AT5G15250.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10006971m.g.v1.0, Thhalv10016003m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g05190.v2.2, Sp4g13440.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g047630.2N, BniB03g001870.2N, BniB06g020050.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2895, Ceq08G0283 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3017 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13510 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1123s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07490 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9363 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.195, evm.TU.LG04.1680 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008613, Pov_00020264 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G19529, Lb4G21847 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2622, AH06.908, BH06.2425, BH06.941, CH06.1035 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0514730, gene-QOZ80_6AG0547740 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0666580.1, HORVU.MOREX.r3.7HG0736940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028901 |
| Poaceae | Oryza coarctata | 4 | Oco11G005860, Oco11G014930, Oco12G005930, Oco12G015100 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g12370.1, LOC_Os06g45820.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G096000, gene-BS78_10G223000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103211, Pt_Chr0401297 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G031610, Chr05G009470, Chr10G019980, Chr11G002680 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G347500, Tel7E01G797300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG023390, gene_TRIDC7AG065720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G188300.1, TraesCS7A02G471000.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb274190_P001, Zm00001eb279710_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-35128, nbis-gene-40527, nbis-gene-51395 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g29394, Zma_g30971, Zma_g31627, Zma_g33231 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1033, evm.TU.LG06.1411, evm.TU.LG11.229 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.48567.1, evm.TU.Scaffold_6_RagTag.280 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11756, nbisL1-mrna-15135, nbisL1-mrna-21003 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-2168, nbisL1-mrna-727, nbisL1-mrna-8632 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11171, nbisL1-mrna-18672, nbisL1-mrna-236 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.752, evm.TU.utg000011l.163 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013627 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11794, nbisL1-mrna-1333, nbisL1-mrna-9791 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-17335, nbisL1-mrna-19976, nbisL1-mrna-4899 |
| Salicaceae | Populus euphratica | 5 | populus_peu24528, populus_peu24538, populus_peu27152 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618745, gene-LOC132622252 |
| Solanaceae | Solanum chilense | 2 | SOLCI005316100, SOLCI005367300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009138, gene-LOC107025769 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.8244_chr05_+, gene_16959 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1919, TC06G0682 |
| Zosteraceae | Zostera marina | 2 | Zosma03g30160.v3.1, Zosma04g25210.v3.1 |