Basic Information
Locus ID:
jg19846
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8698719 | 8715696 | + | jg19846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 116,576.82 Da | 37.31 | 87.00 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14137 | STKc_GSK3 | 67 | 358 | 0.0 | IPR039192 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 908 | 1022 | 1.1E-10 | IPR001525 |
| Pfam | PF00069 | Protein kinase domain | 72 | 355 | 1.1E-64 | IPR000719 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 703 | 900 | 2.55E-22 | IPR029063 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 907 | 1023 | 7.42E-16 | IPR029063 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 71 | 379 | 1.89E-87 | IPR011009 |
| Gene3D | G3DSA:1.10.8.10 | - | 477 | 533 | 2.0E-5 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 701 | 779 | 4.5E-6 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 863 | 1033 | 3.1E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 56 | 151 | 1.3E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 152 | 399 | 1.2E-80 | - |
| SMART | SM00220 | serkin_6 | 72 | 355 | 3.0E-88 | IPR000719 |
| ProSiteProfiles | PS51680 | SAM-dependent methyltransferase DRM-type domain profile. | 702 | 1031 | 132.202774 | IPR030380 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 907 | 1033 | 20.453245 | IPR001525 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 72 | 355 | 43.876896 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 78 | 102 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 192 | 204 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 484 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14640.1 | shaggy-like kinase 13. | 0 |
| RefSeq | XP_011097426.1 | DNA (cytosine-5)-methyltransferase DRM2 [Sesamum indicum] | 0 |
| Q8VZD5 | Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana OX=3702 GN=ASK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4RD90 | non-specific serine/threonine protein kinase OS=Castanea mollissima OX=60419 GN=CMV_010113 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology