Basic Information
Locus ID:
jg19831
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8582091 | 8582600 | - | jg19831 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 18,322.70 Da | 38.84 | 84.73 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 77 | 120 | 6.85639E-16 | - |
| Pfam | PF13639 | Ring finger domain | 77 | 120 | 8.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 124 | 1.84E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 124 | 1.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 78 | 119 | 6.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 78 | 120 | 11.928664 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 148 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011098503.1 | RING-H2 finger protein ATL56-like [Sesamum indicum] | 0 |
| Q9M0R5 | Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 PE=3 SV=1 | 0 | |
| TrEMBL | A0A830CK62 | RING-H2 finger protein atl52 OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002115700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology