Basic Information
Locus ID:
jg19773
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8045914 | 8049310 | + | jg19773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 57,699.61 Da | 58.76 | 58.14 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 419 | 476 | 7.6E-26 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 242 | 297 | 2.6E-23 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 410 | 478 | 7.19E-30 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 238 | 299 | 5.49E-25 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 402 | 479 | 1.4E-35 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 229 | 300 | 2.7E-27 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 418 | 477 | 3.1E-40 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 240 | 298 | 4.7E-35 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 235 | 299 | 22.997328 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 413 | 478 | 37.929428 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_011085706.1 | probable WRKY transcription factor 4 isoform X1 [Sesamum indicum] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G9HBE2 | WRKY domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12543 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology