Basic Information
Locus ID:
jg19639
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 6889977 | 6893794 | + | jg19639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 69,708.57 Da | 30.82 | 84.31 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 211 | 463 | 2.9E-81 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 24 | 117 | 7.69E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 121 | 2.1E-9 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 487 | 79.400154 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 609 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_011073694.1 | BTB/POZ domain-containing protein NPY4 [Sesamum indicum] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9H4V2 | BTB/POZ domain-containing protein NPY4 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_14843 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology