Basic Information
Locus ID:
jg19348
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3609493 | 3613063 | - | jg19348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 97,374.79 Da | 37.40 | 106.32 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 215 | 237 | 1.5 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 66 | 1.3E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 143 | 200 | 4.5E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 501 | 559 | 1.5E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 747 | 876 | 2.5E-11 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 54 | 303 | 7.82E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 681 | 884 | 6.52E-34 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 264 | 589 | 9.02E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 203 | 257 | 4.5E-13 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 667 | 740 | 3.4E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 741 | 886 | 5.0E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 202 | 3.9E-48 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 258 | 617 | 5.6E-98 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 92 | 116 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 332 | 355 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 523 | 547 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 140 | 163 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 188 | 213 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 499 | 522 | 32.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 553 | 879 | 9.799822 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 239 | 261 | 7.119001 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 689 | 712 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 454 | 467 | 8.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 499 | 512 | 8.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28490.1 | Leucine-rich receptor-like protein kinase family protein. member of Receptor kinase-like protein family | 0 |
| RefSeq | XP_011100241.1 | receptor-like protein kinase HSL1 [Sesamum indicum] | 0 |
| P47735 | Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9ULX5 | receptor-like protein kinase HSL1 OS=Sesamum indicum OX=4182 GN=LOC105178469 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10766, jg19348, jg6162 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8825 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036492 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39544, Sbi_jg54770 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14789 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028522 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12682, Sgl17922 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018473, gene:ENSEOMG00000036411 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0020330, CQ.Regalona.r1.1BG0004780 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30042510, pistato.v30099080, pistato.v30103470 |
| Apiaceae | Apium graveolens | 4 | Ag1G00661, Ag2G00472, Ag4G01884, Ag9G00250 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G019300 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705762, gene-LOC120104079 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.721.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G21189, Ftri16G32708, Ftri4G21841 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G09970.2, AT3G19700.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006696m.g.v1.0, Thhalv10022054m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g08630.v2.2, Sp3g17740.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g005110.2N, BniB03g003650.2N, BniB07g051070.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G2730, Ceq03G2731, Ceq09G0507 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2871, Cgl03G2872, Cgl09G0547 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14310 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g31570, gene.Thate06g14080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1179, nbisL1-mrna-12394 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.275, evm.TU.LG08.683 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037137 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23386, Lb7G32874 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4194, BH05.4275, CH05.4504 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0399330, gene-QOZ80_5AG0399340 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0088480.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000162, gene-QYE76_000163 |
| Poaceae | Oryza coarctata | 2 | Oco23G011120, Oco24G010930 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g33380.1, LOC_Os12g43640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G166000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704392, Pt_Chr0704400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G019800, Chr06G020720, Chr19G007130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G031200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG002040 |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G103900.1.cds1, TraesCS1B02G381300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb134290_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25399, Zma_g26192 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG12.1733, evm.TU.LG12.1734 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26960 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.448, evm.TU.Scaffold_7_RagTag.878 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-19335, nbisL1-mrna-4750, nbisL1-mrna-9380 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10356, nbisL1-mrna-1060, nbisL1-mrna-2021 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20586, nbisL1-mrna-6707, nbisL1-mrna-9718 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.264, add.evm.TU.utg000018l.92 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003231, Maker00004916, Maker00010864 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11476, nbisL1-mrna-17745, nbisL1-mrna-22020 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10125, nbisL1-mrna-16530, nbisL1-mrna-17078 |
| Salicaceae | Populus euphratica | 2 | populus_peu32166, populus_peu36155 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598892, gene-LOC132627686 |
| Solanaceae | Solanum chilense | 2 | SOLCI001114500, SOLCI005026100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001432, gene-LOC107004758 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.28054_chr04_+, gene_1807, gene_4747 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2766, TC10G2332 |
| Zosteraceae | Zostera marina | 1 | Zosma05g29130.v3.1 |