Basic Information
Locus ID:
jg1927
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 13933905 | 13941161 | + | jg1927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 94,511.40 Da | 54.41 | 80.07 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 49 | 200 | 5.18739E-47 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 783 | 816 | 2.17235E-16 | - |
| Pfam | PF00069 | Protein kinase domain | 495 | 748 | 2.1E-41 | IPR000719 |
| Pfam | PF04564 | U-box domain | 779 | 814 | 1.3E-8 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 778 | 816 | 5.47E-11 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 57 | 166 | 5.94E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 469 | 758 | 1.48E-68 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 565 | 764 | 5.8E-49 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 38 | 170 | 4.7E-8 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 461 | 564 | 2.9E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 773 | 820 | 3.8E-17 | IPR013083 |
| SMART | SM00220 | serkin_6 | 492 | 760 | 7.2E-33 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 782 | 827 | 0.0021 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 492 | 761 | 34.845268 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 778 | 837 | 14.464485 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 498 | 519 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 610 | 622 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 277 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
| Coils | Coil | Coil | 422 | 463 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_011092453.1 | U-box domain-containing protein 33 [Sesamum indicum] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9TYH4 | U-box domain-containing protein 33 OS=Sesamum indicum OX=4182 GN=LOC105172628 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology