Basic Information
Locus ID:
jg19048
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD repeat-containing protein 26-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 768709 | 774329 | + | jg19048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 64,696.86 Da | 43.85 | 93.36 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 261 | 553 | 1.61683E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 346 | 383 | 0.0039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 553 | 6.3E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 472 | 510 | 0.0072 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 295 | 0.0047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 341 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 254 | 553 | 9.16E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 249 | 514 | 3.5E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 515 | 574 | 3.6E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 385 | 425 | 86.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 554 | 2.7E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 511 | 0.69 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 465 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 341 | 3.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 2.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 1.0E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 521 | 553 | 11.5765 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 309 | 345 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 385 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 297 | 9.54651 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 60 | 92 | 8.929858 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 350 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 102 | 150 | 8.232094 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 297 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 553 | 13.983944 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 370 | 384 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_011100492.1 | WD repeat-containing protein 26-like isoform X1 [Sesamum indicum] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UMI3 | WD repeat-containing protein 26-like isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105178668 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology