Basic Information
Locus ID:
jg19047
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 760046 | 761287 | + | jg19047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 43,554.07 Da | 42.51 | 87.72 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 39 | 118 | 4.5E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 205 | 335 | 1.5E-13 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 190 | 336 | 1.05E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 33 | 140 | 4.19E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 169 | 336 | 5.9E-12 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 25 | 168 | 3.2E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 231 | 336 | 3.6E-17 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 192 | 333 | 11.78244 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 27 | 174 | 8.523043 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 386 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_011100491.1 | fasciclin-like arabinogalactan protein 2 [Sesamum indicum] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UPM2 | fasciclin-like arabinogalactan protein 2 OS=Sesamum indicum OX=4182 GN=LOC105178666 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology