Basic Information
Locus ID:
jg19043
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 730323 | 735829 | - | jg19043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 66,661.61 Da | 43.98 | 99.78 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 274 | 9.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 501 | 539 | 2.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 459 | 496 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 320 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 238 | 543 | 2.04E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 232 | 504 | 1.0E-45 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 505 | 551 | 9.3E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 416 | 451 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 497 | 0.82 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 540 | 1.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 320 | 1.5E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 321 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 276 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 276 | 9.09833 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 507 | 549 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 507 | 542 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 483 | 506 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 329 | 12.313033 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 262 | 276 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_022850419.1 | WD repeat-containing protein 26 homolog [Olea europaea var. sylvestris] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S0QZA2 | WD repeat-containing 26-like isoform X1 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A081275 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology