Basic Information
Locus ID:
jg19042
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 727102 | 730264 | - | jg19042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 43,163.65 Da | 52.58 | 84.45 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 277 | 313 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 319 | 356 | 0.027 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 239 | 356 | 2.75E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 174 | 370 | 4.1E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 272 | 314 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 357 | 0.0022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 268 | 350.0 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_044501791.1 | WD repeat-containing protein 26 homolog isoform X2 [Mangifera indica] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TM09 | WD repeat-containing protein 26 OS=Sesamum indicum OX=4182 GN=LOC105167421 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||