Basic Information
Locus ID:
jg19040
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD repeat-containing protein 26-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 722375 | 724554 | - | jg19040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 47,996.68 Da | 39.21 | 86.36 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 381 | 418 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 289 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 211 | 246 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 197 | 418 | 5.04E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 425 | 6.4E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 147 | 294 | 1.1E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 332 | 376 | 0.58 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 328 | 7.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 419 | 1.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 292 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 246 | 0.022 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 19 | 51 | 8.291069 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 214 | 255 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 386 | 428 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 386 | 421 | 10.23196 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 66 | 109 | 8.205706 | IPR006595 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_022850419.1 | WD repeat-containing protein 26 homolog [Olea europaea var. sylvestris] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S0S3Z4 | WD repeat-containing 26-like isoform X1 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A107772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology