Basic Information
Locus ID:
jg18722
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 10308366 | 10312358 | + | jg18722 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 83,542.62 Da | 38.65 | 91.49 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 3.60483E-89 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 4.30393E-86 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 211 | 2.5E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 575 | 7.1E-14 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 242 | 358 | 5.4E-21 | IPR012000 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 230 | 383 | 6.54E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 600 | 1.79E-40 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 213 | 1.27E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 1.3E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 397 | 590 | 2.9E-55 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 217 | 2.8E-61 | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_011071825.1 | pyruvate decarboxylase 1 [Sesamum indicum] | 0 |
| P51846 | Pyruvate decarboxylase 2 OS=Nicotiana tabacum OX=4097 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SNV7 | pyruvate decarboxylase OS=Sesamum indicum OX=4182 GN=LOC105157189 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology