Basic Information
Locus ID:
jg18718
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 10294388 | 10299451 | + | jg18718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 128,889.59 Da | 39.75 | 87.62 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 14 | 91 | 1.13359E-6 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 389 | 966 | 4.2E-180 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 6 | 103 | 2.19E-8 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 96 | 2.7E-6 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 12 | 95 | 9.592695 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_011071821.1 | RNA-dependent RNA polymerase 2 [Sesamum indicum] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SP79 | RNA-dependent RNA polymerase OS=Sesamum indicum OX=4182 GN=LOC105157186 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology