HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: jg18665
Species & Taxonomic ID: Avicennia marina & 1381980
Genome Assembly: GCA_013168755.1
Description: E3 ubiquitin-protein ligase
Maps and Mapping Data
Chromosome Start End Strand ID
chr27 9851459 9851872 + jg18665
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
4.41 15,843.51 Da 35.69 63.36 -0.62
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF57850 RING/U-box 89 131 2.98E-11 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 65 135 5.7E-10 IPR013083
ProSiteProfiles PS50089 Zinc finger RING-type profile. 90 128 9.022323 IPR001841
KEGG Pathway
KO Term:
K10635 (E3 ubiquitin-protein ligase Arkadia [EC:2.3.2.27])
Best hit
Source Best Hit ID Description E-value
RefSeq XP_004290596.1 PREDICTED: E3 ubiquitin-protein ligase MBR2 [Fragaria vesca subsp. vesca] 0
TrEMBL A0A2P6PMK0 Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0257951 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 14 jg18655, jg18656, jg18663, jg18664, jg18665, jg19338 ...
jg25790, jg25792, jg25794, jg25796, jg25797, jg25798, jg25814, jg25839
Amaranthaceae Salicornia bigelovii 1 Sbi_jg43937
Apiaceae Apium graveolens 2 Ag3G01211, Ag9G00569
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.