Basic Information
Locus ID:
jg18650
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
CPK30
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 9738535 | 9743240 | - | jg18650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 61,634.84 Da | 41.45 | 86.66 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 437 | 499 | 2.09467E-20 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 59 | 317 | 7.93878E-141 | - |
| Pfam | PF00069 | Protein kinase domain | 62 | 318 | 6.5E-76 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 436 | 499 | 6.2E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 364 | 425 | 3.2E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 347 | 525 | 5.99E-46 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 336 | 6.47E-89 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 61 | 145 | 2.2E-28 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 327 | 502 | 5.6E-54 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 146 | 326 | 7.1E-62 | - |
| SMART | SM00220 | serkin_6 | 60 | 318 | 3.1E-99 | IPR000719 |
| SMART | SM00054 | efh_1 | 365 | 393 | 7.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 401 | 429 | 0.02 | IPR002048 |
| SMART | SM00054 | efh_1 | 473 | 501 | 5.1E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 437 | 465 | 6.2E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 361 | 396 | 15.963966 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 60 | 318 | 49.784908 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 397 | 432 | 10.384886 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 469 | 504 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 433 | 468 | 15.350267 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 446 | 458 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 66 | 89 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 180 | 192 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 482 | 494 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 374 | 386 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 410 | 422 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_011071722.1 | calcium-dependent protein kinase 10 [Sesamum indicum] | 0 |
| Q9M9V8 | Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CPK10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SP01 | calcium-dependent protein kinase 10 OS=Sesamum indicum OX=4182 GN=LOC105157120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology