Basic Information
Locus ID:
jg18627
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 9349646 | 9356845 | - | jg18627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 21,505.18 Da | 70.54 | 67.84 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 45 | 183 | 2.42607E-75 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 46 | 182 | 1.7E-52 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 31 | 188 | 2.1E-64 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 37 | 188 | 7.4E-68 | IPR016135 |
| SMART | SM00212 | ubc_7 | 45 | 188 | 9.3E-69 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 42 | 188 | 60.809738 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 115 | 130 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_020250620.1 | ubiquitin-conjugating enzyme E2 2 [Asparagus officinalis] | 0 |
| P25866 | Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1 | 0 | |
| TrEMBL | I1KXR3 | UBC core domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_08G297300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology