Basic Information
Locus ID:
jg1855
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 13449362 | 13458645 | + | jg1855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 54,963.33 Da | 27.99 | 107.96 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 354 | 9.54853E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 66 | 248 | 1.9E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 264 | 359 | 2.5E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 262 | 391 | 1.38E-27 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 260 | 417 | 7.3E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 362 | 5.6E-20 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 24.79315 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 365 | 20.072905 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 328 | 336 | 3.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 306 | 319 | 3.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 281 | 293 | 3.7E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 509 | - | - |
| Coils | Coil | Coil | 391 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_011091137.1 | synaptotagmin-5 [Sesamum indicum] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U147 | synaptotagmin-5 OS=Sesamum indicum OX=4182 GN=LOC105171648 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology