Basic Information
Locus ID:
jg18508
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 6386722 | 6398504 | - | jg18508 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.76 | 44,234.92 Da | 41.91 | 72.61 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 275 | 303 | 5.1E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 347 | 370 | 5.7E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 314 | 343 | 1.6E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 269 | 303 | 3.66E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 311 | 343 | 2.35E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 344 | 377 | 1.26E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 266 | 305 | 2.0E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 344 | 378 | 6.2E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 309 | 343 | 5.9E-12 | - |
| SMART | SM00547 | zf_4 | 277 | 301 | 1.1E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 316 | 340 | 6.1E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 349 | 373 | 1.5E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 275 | 304 | 9.958232 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 347 | 376 | 10.127614 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 314 | 343 | 11.053575 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 318 | 337 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 351 | 370 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_011072998.1 | zinc finger protein VAR3, chloroplastic isoform X1 [Sesamum indicum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9SRX9 | zinc finger protein VAR3, chloroplastic isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105158070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology