Basic Information
Locus ID:
jg18452
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 5098524 | 5100280 | - | jg18452 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.83 | 22,705.99 Da | 62.87 | 87.50 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 70 | 5.1749E-39 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 4.6E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 92 | 171 | 1.7E-20 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 80 | 4.45E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 86 | 3.8E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 6.6E-41 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 177 | 13.26183 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.379784 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 3.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 3.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 3.4E-30 | IPR002100 |
| Coils | Coil | Coil | 87 | 107 | - | - |
| Coils | Coil | Coil | 124 | 144 | - | - |
| Coils | Coil | Coil | 150 | 177 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58780.1 | K-box region and MADS-box transcription factor family protein . One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. | 0 |
| RefSeq | XP_011073081.1 | MADS-box transcription factor 23 isoform X2 [Sesamum indicum] | 0 |
| Q93XH4 | Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SRP6 | MADS-box transcription factor 23 isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105158139 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology