Basic Information
Locus ID:
jg18362
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 3520784 | 3523603 | + | jg18362 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.39 | 39,957.10 Da | 48.61 | 82.78 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 326 | 368 | 8.86728E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.52308E-26 | - |
| Pfam | PF00627 | UBA/TS-N domain | 148 | 186 | 1.1E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 329 | 365 | 9.0E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 249 | 304 | 6.0E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.9E-13 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 131 | 192 | 6.22E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 246 | 312 | 2.22E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 311 | 371 | 6.39E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 1.61E-19 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.1E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 239 | 304 | 1.4E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 142 | 191 | 2.1E-19 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 321 | 369 | 2.0E-23 | - |
| SMART | SM00165 | uba_6 | 330 | 367 | 2.5E-8 | IPR015940 |
| SMART | SM00727 | CBM | 247 | 290 | 4.0E-5 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.7E-19 | IPR000626 |
| SMART | SM00165 | uba_6 | 148 | 188 | 3.7E-4 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 371 | 2.1E-122 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.08201 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 328 | 368 | 15.197575 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 146 | 189 | 12.546894 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 341 | 355 | 9.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 275 | 297 | 9.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 356 | 371 | 9.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 324 | 340 | 9.6E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 130 | - | - |
| Coils | Coil | Coil | 276 | 296 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_011082656.1 | ubiquitin receptor RAD23b isoform X1 [Sesamum indicum] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A2G9HA40 | Ubiquitin receptor RAD23 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_09342 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology