Basic Information
Locus ID:
jg18303
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ccr4-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 3030601 | 3031413 | - | jg18303 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 30,055.85 Da | 32.74 | 94.89 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 136 | 4.2E-8 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 155 | 243 | 5.3E-7 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 264 | 7.21E-88 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 269 | 1.0E-98 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_011073341.1 | probable CCR4-associated factor 1 homolog 6 [Sesamum indicum] | 0 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SVA3 | poly(A)-specific ribonuclease OS=Sesamum indicum OX=4182 GN=LOC105158320 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology