Basic Information
Locus ID:
jg18268
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 2657344 | 2666624 | - | jg18268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 124,988.81 Da | 37.84 | 78.87 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 950 | 0.0063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 490 | 6.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 396 | 959 | 4.63E-46 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 838 | 1098 | 1.18E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 572 | 2.3E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 835 | 1103 | 6.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 573 | 682 | 8.9E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 490 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 534 | 0.0027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 443 | 60.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1002 | 1043 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 580 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 828 | 865 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1060 | 1096 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 13.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.5E-15 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 2.0E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 950 | 9.836508 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 499 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.877893 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 950 | 11.778342 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 477 | 491 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1134 | - | - |
| Coils | Coil | Coil | 1131 | 1134 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_011073378.1 | protein TOPLESS [Sesamum indicum] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SSC8 | protein TOPLESS OS=Sesamum indicum OX=4182 GN=LOC105158348 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology