Basic Information
Locus ID:
jg18249
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 2468050 | 2477584 | - | jg18249 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 118,910.13 Da | 40.02 | 86.15 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 411 | 445 | 7.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 866 | 899 | 0.0016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 308 | 488 | 1.14E-20 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 429 | 992 | 2.75E-41 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 923 | 1063 | 2.59E-7 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 302 | 498 | 6.4E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 766 | 1005 | 6.6E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 499 | 639 | 1.1E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 817 | 857 | 0.71 | IPR001680 |
| SMART | SM00320 | WD40_4 | 860 | 899 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 445 | 6.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 779 | 814 | 250.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 2.0E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.9E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 298 | 337 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 951 | 992 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 622 | 490.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 489 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 535 | 76.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 578 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 358 | 398 | 38.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 867 | 899 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 411 | 449 | 8.544697 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.369186 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 867 | 899 | 10.179234 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.415882 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 411 | 454 | 10.842632 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 432 | 446 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1047 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1058 | 1081 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_011073420.1 | topless-related protein 4 [Sesamum indicum] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9SSG3 | topless-related protein 4 OS=Sesamum indicum OX=4182 GN=LOC105158374 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology