Basic Information
Locus ID:
jg18194
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 1969391 | 1970491 | - | jg18194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 40,244.44 Da | 36.72 | 74.07 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13964 | Kelch motif | 118 | 165 | 3.4E-6 | - |
| Pfam | PF01344 | Kelch motif | 180 | 213 | 1.3E-7 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 54 | 5.89E-9 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 93 | 349 | 7.06E-37 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 64 | 9.9E-6 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 83 | 356 | 4.0E-33 | IPR015915 |
| SMART | SM00612 | kelc_smart | 180 | 227 | 0.0013 | IPR006652 |
| SMART | SM00612 | kelc_smart | 129 | 178 | 2.0 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15670.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_011072289.1 | F-box/kelch-repeat protein At1g80440-like [Sesamum indicum] | 0 |
| Q9LMR5 | F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana OX=3702 GN=At1g15670 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SQC2 | F-box/kelch-repeat protein At1g80440-like OS=Sesamum indicum OX=4182 GN=LOC105157577 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology