Basic Information
Locus ID:
jg18161
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 1698622 | 1702908 | - | jg18161 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 106,936.98 Da | 40.10 | 77.51 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 419 | 548 | 2.81791E-17 | IPR001480 |
| CDD | cd00028 | B_lectin | 57 | 186 | 2.02991E-19 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 728 | 757 | 1.2E-6 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 463 | 573 | 9.7E-29 | IPR001480 |
| Pfam | PF01453 | D-mannose binding lectin | 101 | 211 | 3.5E-28 | IPR001480 |
| Pfam | PF11883 | Domain of unknown function (DUF3403) | 904 | 948 | 1.7E-9 | IPR021820 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 101 | 216 | 2.36E-17 | IPR036426 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 462 | 612 | 6.02E-17 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 407 | 545 | 1.3E-11 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 44 | 183 | 1.5E-12 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 819 | 915 | 6.9E-8 | - |
| SMART | SM00108 | blect_4 | 410 | 548 | 7.4E-17 | IPR001480 |
| SMART | SM00108 | blect_4 | 48 | 186 | 3.0E-21 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 695 | 779 | 7.448375 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 410 | 541 | 13.143986 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 48 | 179 | 13.821723 | IPR001480 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16030.3 | - | 0 |
| RefSeq | XP_023915572.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC112027133 [Quercus suber] | 0 |
| Q9LW83 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana OX=3702 GN=CES101 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835D777 | Non-specific serine/threonine protein kinase OS=Tetracentron sinense OX=13715 GN=HHK36_021591 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg18161, jg18162, jg18163, jg18164, jg18165, jg23599 |
| Anacardiaceae | Pistacia vera | 10 | pistato.v30014320, pistato.v30036750, pistato.v30036760 ... |
| Apiaceae | Apium graveolens | 1 | AgUnG01050 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18470.1 |
| Brassicaceae | Brassica nigra | 3 | BniB05g045300.2N, BniB08g009250.2N, BniB08g009270.2N |
| Plantaginaceae | Plantago ovata | 4 | Pov_00016931, Pov_00029256, Pov_00029257, Pov_00041214 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1374, evm.TU.LG02.1375, evm.TU.LG09.595 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.347, evm.TU.Scaffold_8_RagTag.280 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3277 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3165 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13833 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21937 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16308 |
| Salicaceae | Populus euphratica | 5 | populus_peu00251, populus_peu00252, populus_peu00253 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635386, gene-LOC132637212 |