Basic Information
Locus ID:
jg18103
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 1281080 | 1287013 | + | jg18103 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 93,581.94 Da | 49.73 | 81.94 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 67 | 222 | 2.90237E-28 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 431 | 507 | 1.1E-7 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 375 | 434 | 1.0E-9 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 101 | 177 | 1.9E-8 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 28 | 372 | 3.1E-105 | IPR007012 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 375 | 501 | 2.94E-34 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 223 | 372 | 1.54E-62 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 24 | 221 | 9.4E-50 | IPR043519 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 60 | 216 | 6.0E-151 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 28 | 370 | 6.0E-151 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 375 | 490 | 6.0E-26 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 838 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_011072440.1 | nuclear poly(A) polymerase 4-like isoform X1 [Sesamum indicum] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SRE2 | polynucleotide adenylyltransferase OS=Sesamum indicum OX=4182 GN=LOC105157694 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology