Basic Information
Locus ID:
jg18030
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 711962 | 714887 | + | jg18030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 50,893.72 Da | 39.73 | 93.36 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 83 | 281 | 1.98389E-133 | - |
| CDD | cd18787 | SF2_C_DEAD | 292 | 409 | 1.22937E-41 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 305 | 413 | 2.2E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 104 | 265 | 5.2E-41 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 148 | 433 | 3.81E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 69 | 287 | 3.6E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 288 | 452 | 4.0E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 332 | 413 | 8.7E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 98 | 295 | 1.9E-56 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 110 | 280 | 29.471882 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 291 | 452 | 25.626389 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 79 | 107 | 10.40907 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 226 | 234 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_011079970.1 | eukaryotic initiation factor 4A-8 [Sesamum indicum] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9T795 | eukaryotic initiation factor 4A-8 OS=Sesamum indicum OX=4182 GN=LOC105163354 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology