Basic Information
Locus ID:
jg17991
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 428203 | 434551 | - | jg17991 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 51,705.78 Da | 49.78 | 74.08 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 3.86604E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 3.89287E-32 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 6.01322E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 1.7E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 1.8E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 321 | 6.0E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 220 | 5.1E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 250 | 343 | 2.71E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 1.34E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 217 | 1.8E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 3.0E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 236 | 338 | 2.0E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 4.2E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 3.3E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 1.1E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 17.080015 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.272143 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 15.186867 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_011072608.1 | oligouridylate-binding protein 1B-like [Sesamum indicum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9GWG7 | Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) OS=Handroanthus impetiginosus OX=429701 GN=CDL12_17856 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology