Basic Information
Locus ID:
jg17978
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 332865 | 334880 | - | jg17978 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 75,386.56 Da | 40.51 | 69.91 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 447 | 472 | 0.043 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 345 | 373 | 1.2E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 376 | 405 | 3.3E-6 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 541 | 661 | 2.6E-40 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 309 | 421 | 2.6E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 422 | 520 | 1.3E-9 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 376 | 408 | 4.5E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 345 | 373 | 2.6E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 342 | 372 | 9.678885 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 373 | 407 | 11.783455 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_020548502.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Sesamum indicum] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8M8UPV9 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Sesamum indicum OX=4182 GN=LOC105157871 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology