Basic Information
Locus ID:
jg17962
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 211528 | 212430 | + | jg17962 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 32,831.70 Da | 73.86 | 76.67 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 115 | 158 | 2.17877E-19 | - |
| Pfam | PF13639 | Ring finger domain | 115 | 158 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 167 | 9.34E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 166 | 2.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 116 | 157 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 116 | 158 | 11.840146 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 290 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011072704.1 | RING-H2 finger protein ATL3 [Sesamum indicum] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9STL8 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105157887 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology