Basic Information
Locus ID:
jg17947
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 108769 | 112893 | + | jg17947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 29,456.56 Da | 53.04 | 95.21 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 70 | 118 | 1.61001E-20 | - |
| Pfam | PF12906 | RING-variant domain | 70 | 107 | 9.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 66 | 121 | 7.77E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 129 | 1.3E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 69 | 118 | 2.8E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 62 | 124 | 20.267365 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_042052274.1 | E3 ubiquitin-protein ligase MARCHF8-like [Salvia splendens] | 0 |
| TrEMBL | A0A2G9I2P8 | Protein involved in mRNA turnover and stability OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03391 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology