Basic Information
Locus ID:
jg17944
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr27 | 67665 | 82796 | - | jg17944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 65,831.22 Da | 51.95 | 86.47 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 368 | 410 | 1.3E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 367 | 439 | 1.44E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 364 | 411 | 4.7E-8 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 366 | 412 | 9.02057 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 258 | - | - |
| Coils | Coil | Coil | 203 | 223 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51080.1 | 0 | |
| RefSeq | XP_051135317.1 | uncharacterized protein LOC127254312 isoform X1 [Andrographis paniculata] | 0 |
| TrEMBL | A0A2G5DK52 | F-box domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01800126v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17944 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5515 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26801, Sbi_jg33767 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8456 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011704 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73567, Sgl77118 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007168, gene:ENSEOMG00000008317 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0007790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30132560 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G019530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713112 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.618.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020156m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18290.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g043620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1074 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02080 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.113 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00034023 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24111, Lb5G27651 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.2601, CH03.2809 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0492400.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006347 |
| Poaceae | Oryza coarctata | 2 | Oco17G008410, Oco18G008490 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g32240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G228400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705362 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G001220, Chr10G014720, Chr11G007500, Chr14G016500 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G438100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG041420, gene_TRIDC5BG045290 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G275000.1, TraesCS5B02G274800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb102140_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10407 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30571 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.229, evm.TU.LG24.475 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g06150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.113 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13701 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17754 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.913 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3095 |
| Salicaceae | Populus euphratica | 1 | populus_peu05955 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633599 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014262 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30890_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0643 |