Basic Information
Locus ID:
jg17783
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 12402070 | 12406668 | - | jg17783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 83,634.28 Da | 51.56 | 62.08 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 18 | 47 | 0.00193312 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 377 | 506 | 3.36415E-62 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 388 | 497 | 6.2E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 182 | 351 | 2.8E-47 | IPR011545 |
| Pfam | PF00397 | WW domain | 17 | 47 | 3.7E-6 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 230 | 513 | 1.7E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 49 | 9.76E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 368 | 539 | 2.0E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 132 | 367 | 1.8E-86 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 12 | 62 | 1.3E-5 | - |
| SMART | SM00490 | helicmild6 | 417 | 497 | 2.7E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 177 | 380 | 9.7E-64 | IPR014001 |
| SMART | SM00456 | ww_5 | 16 | 49 | 1.6E-5 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 392 | 536 | 25.098572 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 158 | 186 | 10.544995 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 189 | 363 | 29.79254 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 15 | 49 | 11.0732 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 21 | 47 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 309 | 317 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 613 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.6 | - | 0 |
| RefSeq | XP_011098453.1 | ATP-dependent RNA helicase-like protein DB10 [Sesamum indicum] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UI88 | ATP-dependent RNA helicase-like protein DB10 OS=Sesamum indicum OX=4182 GN=LOC105177116 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology