Basic Information
Locus ID:
jg17500
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 10422187 | 10424115 | - | jg17500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 70,199.98 Da | 37.56 | 88.52 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 378 | 616 | 7.9E-37 | IPR000719 |
| Pfam | PF01476 | LysM domain | 197 | 232 | 0.012 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 339 | 618 | 9.29E-63 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 329 | 418 | 8.6E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 419 | 630 | 1.1E-53 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 281 | 619 | 32.979584 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 187 | 231 | 8.823793 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 327 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_011099273.1 | lysM domain receptor-like kinase 4 [Sesamum indicum] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UJT4 | lysM domain receptor-like kinase 4 OS=Sesamum indicum OX=4182 GN=LOC105177727 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology