Basic Information
Locus ID:
jg17105
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 2083235 | 2084545 | + | jg17105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 48,868.25 Da | 41.94 | 98.17 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 28 | 70 | 3.71191E-25 | - |
| Pfam | PF04564 | U-box domain | 24 | 95 | 1.4E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 14 | 99 | 3.71E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 125 | 411 | 2.8E-17 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 100 | 6.6E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 114 | 432 | 2.6E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 27 | 90 | 1.5E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 23 | 97 | 39.082069 | IPR003613 |
| Coils | Coil | Coil | 130 | 150 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_011099937.1 | U-box domain-containing protein 21-like [Sesamum indicum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UI47 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105178214 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology