Basic Information
Locus ID:
jg16997
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 811222 | 815267 | + | jg16997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 36,181.10 Da | 42.20 | 97.17 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 35 | 83 | 3.55365E-15 | - |
| Pfam | PF12906 | RING-variant domain | 35 | 82 | 2.2E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 87 | 1.94E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 95 | 3.5E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 34 | 83 | 9.6E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 27 | 89 | 19.951649 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_020552628.1 | uncharacterized protein LOC105171236 isoform X1 [Sesamum indicum] | 0 |
| TrEMBL | A0A2G9GK94 | Ubiquitin--protein ligase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21743 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology