Basic Information
Locus ID:
jg16749
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 9637930 | 9649264 | + | jg16749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 106,181.88 Da | 45.77 | 85.40 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 744 | 898 | 1.0183E-59 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 307 | 897 | 8.2E-87 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 31 | 137 | 3.7E-23 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 8 | 137 | 5.89E-28 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 305 | 900 | 1.37E-108 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 150 | 235 | 7.2E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 294 | 531 | 2.4E-66 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 1 | 149 | 2.0E-37 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 700 | 908 | 5.1E-57 | - |
| SMART | SM00695 | dusp | 27 | 139 | 9.9E-32 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 307 | 900 | 56.497257 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 8 | 136 | 18.5982 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 308 | 323 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 842 | 859 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 285 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_011089575.1 | ubiquitin carboxyl-terminal hydrolase 5 [Sesamum indicum] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G9I044 | Ubiquitin carboxyl-terminal hydrolase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04159 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology