Basic Information
Locus ID:
jg16728
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 9312191 | 9316381 | + | jg16728 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 30,030.92 Da | 41.89 | 109.70 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 84 | 118 | 7.3E-9 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 2 | 87 | 3.0E-16 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 85 | 1.35E-24 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 83 | 270 | 1.6E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 82 | 221 | 7.6E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 222 | 271 | 5.9E-10 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 72 | 1.5E-30 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 271 | 13.319188 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 2 | 24 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06840.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_039775440.1 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Panicum virgatum] | 0 |
| C0LGD7 | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana OX=3702 GN=At1g06840 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7GR96 | Protein kinase domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026126 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16728, jg29538 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009421, gene:ENSEOMG00000042156 |
| Amaranthaceae | Chenopodium quinoa | 16 | CQ.Regalona.r1.2AG0008970, CQ.Regalona.r1.2AG0009740 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G011020 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2329 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2495 |
| Poaceae | Oryza coarctata | 1 | Oco11G007370 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG20.18 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12421, nbisL1-mrna-17488 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018876 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24574 |
| Salicaceae | Populus euphratica | 1 | populus_peu25094 |