Basic Information
Locus ID:
jg16598
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 5155397 | 5155762 | - | jg16598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 13,422.41 Da | 57.88 | 103.97 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 76 | 118 | 3.40342E-18 | - |
| Pfam | PF13639 | Ring finger domain | 76 | 118 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 75 | 121 | 6.8E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 121 | 3.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 76 | 117 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 76 | 118 | 12.946621 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011090059.1 | putative RING-H2 finger protein ATL53 [Sesamum indicum] | 0 |
| Q6GPV5 | E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9I3N0 | RING-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02911 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16598, jg16599, jg35766 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30236250, pistato.v30239070 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000600 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697316, gene-LOC120108756 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.982 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1750, BH04.1754, CH04.2001 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0684210, gene-QOZ80_9BG0710320 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066435 |
| Poaceae | Oryza coarctata | 2 | Oco21G007690, Oco22G008890 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g37230.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G176800, gene-BS78_05G177000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103171 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G005430, Chr17G004780 |
| Poaceae | Zea mays | 1 | Zm00001eb200510_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43061, nbis-gene-43062 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18120, Zma_g18121 |