Basic Information
Locus ID:
jg16573
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 4492594 | 4497322 | - | jg16573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 57,164.47 Da | 58.62 | 78.07 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 271 | 319 | 2.88423E-14 | - |
| Pfam | PF12906 | RING-variant domain | 271 | 318 | 5.5E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 267 | 322 | 6.18E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 326 | 2.6E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 270 | 319 | 1.7E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 263 | 325 | 18.194618 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011089894.1 | uncharacterized protein LOC105170709 isoform X1 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TV34 | uncharacterized protein LOC105170709 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105170709 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology