Basic Information
Locus ID:
jg16534
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
40s ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 3852404 | 3855203 | - | jg16534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.76 | 20,667.76 Da | 66.53 | 83.64 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 86 | 180 | 1.6E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 84 | 181 | 2.09E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 69 | 183 | 9.1E-49 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 86 | 180 | 2.7E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 83 | 181 | 6.0E-40 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 108 | 123 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 84 | 97 | 1.3E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 119 | 134 | 1.3E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 141 | 155 | 1.3E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 82 | 181 | 18.33029 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_011101129.1 | 40S ribosomal protein S20-2 [Sesamum indicum] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S0Q813 | 40S ribosomal S20-2 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A104147 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology