Basic Information
Locus ID:
jg16515
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 3611194 | 3625827 | + | jg16515 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 107,417.25 Da | 48.45 | 77.21 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 610 | 650 | 1.8E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 348 | 403 | 4.0E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 543 | 594 | 3.2E-15 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 840 | 944 | 3.29E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 691 | 751 | 5.76E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 590 | 651 | 2.88E-16 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 795 | 964 | 1.9E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 595 | 678 | 1.5E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 695 | 755 | 9.4E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 697 | 754 | 1.6E-5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 609 | 650 | 2.6E-11 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 804 | 957 | 9.43623 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 607 | 652 | 10.2465 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 610 | 649 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_012838583.1 | PREDICTED: uncharacterized protein LOC105959098 [Erythranthe guttata] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TTB8 | uncharacterized protein LOC105170763 OS=Sesamum indicum OX=4182 GN=LOC105170763 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology