Basic Information
Locus ID:
jg16511
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 3578450 | 3583083 | - | jg16511 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 92,762.09 Da | 60.15 | 66.66 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 773 | 811 | 6.60244E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 771 | 817 | 7.3E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 772 | 818 | 3.53E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 749 | 824 | 5.5E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 773 | 812 | 9.966515 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 76 | - | - |
| Coils | Coil | Coil | 699 | 719 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_011088805.1 | uncharacterized protein LOC105169955 isoform X1 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TV43 | uncharacterized protein LOC105169955 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105169955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology